SNP name (Genomic localization)b | Position in the gene | SNP IDc | PCR primers and short-extension probee |
---|---|---|---|
5'flankingSNP1 (T-1721G) | 5' flanking region | SNP000574351 | F: 5'-ctgttcttttggtgtcctc-3' R:5'-gctcctggcacttaacata-3' P: 5'-taatttctttcatgagtattttatagtt |
5'flankingSNP2 (A-1067G) | 5' flanking region | SNP000574353 | F: 5'-ctgttcttttggtgtcctc-3' R: 5'-gctcctggcacttaacata-3' P: 5'-ttttttgctgagtatggatgtactttaaagctcagga |
5'flankingSNP3 (G-347T) | 5' flanking region | SNP000574354 | F: 5'-cgataataggcgttatcttg-3' R: 5'-ctcaatctctgcgtgtatct-3' P: 5'-tcaggactgggctattaaatagcccagaagcacagaga |
in1SNP1 (T3804A) | Intron 1 (exon 1c) | rs623580 | F: 5'-taattatcctccctccaagt-3' R: 5'-cttacccattcaattaccac-3' P: 5'-agagtatgggcgacgttgtccta |
in2SNP1 (G7465A) | Intron 2 | rs684302 | F: 5'-tgctcttatatgtcttttcaagt-3' R: 5'-gagagatggagcaaaacac-3' P: 5'-ttaaataaaatacctgtatgtcttcttccatca |
in3SNP1 (A12517C) | Intron 3 | rs211105 | F: 5'-tcaggaaaacagaagggta-3' R: 5'-ggtaaattgccctatttctaa-3' P: 5'-aggtggcaaagacaaatgatttctaagatcttttccatcggc |
in6SNP1 (C18626G) | Intron 6 | rs2237907 | F: 5'-gggaagaaattatgtaagtgg-3' R: 5'-gaaatgttccatatctgtgc-3' P: 5'-ttgtaatgcacacaaaactgaaagctgatctcttagggtctggagc |
in7SNP1 (A20004C)d | Intron 7 | rs1800532 | CF: 5'-acccacctacactttcctc-3' CR: 5'-taattgacaacctattaggttc-3' AR: 5'-agcacatgtgaagcatttag-3' AF: 5'-cctatgctcagaatagcagctct-3' |
3'UTRSNP1 (C27224T) | 3' UTR | rs2108977 | F: 5'-cacttgaatatcacagtccatc-3' R: 5'-gcttacagtagatttccttgc-3' P: 5'-tacatttgatggtaaatagatgctagctaatct |
3'UTRSNP2 (A27237G) | 3' UTR | New | F: 5'-cacttgaatatcacagtccatc-3' R: 5'-gcttacagtagatttccttgc-3' P: 5'-aactataaatcagataatcaata |