Examination of NRCAM, LRRN3, KIAA0716, and LAMB1as autism candidate genes

Hutcheson, Holli B; Olson, Lana M; Bradford, Yuki; Folstein, Susan E; Santangelo, Susan L; Sutcliffe, James S; Haines, Jonathan L

doi:10.1186/1471-2350-5-12

BMC Medical Genetics

Table 1 Primers used for candidate geneSNP assays.

From: Examination of NRCAM, LRRN3, KIAA0716, and LAMB1as autism candidate genes

Gene	Assay ID	Forward Primer	Reverse Primer	Product Size	Major Allele Frequency
NRCAM	RS427615	tttgaggcaacccaatagaatg	cctgaccattttcccttcag	203	0.85
NRCAM	RS381828	tcctgggatttactgcttgaa	tctgtaatgaaagcaaagcatga	178	0.79
NRCAM	RS414077	ctgccttggaaggtgaggat	cggaattttctggaaaaacaaca	177	0.89
NRCAM	RS401433	ccctagaagtcccgctttcc	gtggcaccaccaaactgaag	183	0.75
NRCAM	RS1043895	ccctagaagtcccgctttcc	gtggcaccaccaaactgaag	183	0.78
NRCAM	RS405945	atgtagtctgccacccatcc	gctctcagtgctgggactct	173	0.75
NRCAM	RS1269620	tgatcttgccggctctagtt	catggtaccttgactctcttctca	176	0.80
NRCAM	RS1269627	actgacagaggtcttgcaaat	tggaaaggcctccataaaaa	160	0.80
NRCAM	RS1269629	ccccaacagcttgacttcct	gggtgggagcatgagagaga	124	0.54
NRCAM	RS2072546	acttactggatgggcggaca	ttttcctggacccgtaatgg	202	0.79
NRCAM	RS1269634	gcgcttctttttcggcatta	ctgcagacttccgctcttca	212	0.57
LRRN3	RS280282	ttgaagagcaacatggggta	gatgattggggaaaatccaa	193	0.98
LRRN3	RS280306	tgtaccatgtggtaaaactgtaa	gcagaagcatctaacaacagg	206	0.89
LRRN3	RS280309	actggctggagccacattatttt	gaaaatgggcagaggtgaggtat	149	0.95
LRRN3	RS280310	caaaggcattgcttctgaaa	tgtccttgtttctctgcctct	203	0.87
KIAA0716	RS1362155	tcctgacctcaggcgatactc	tgctaggtgagagatagcagagaa	185	0.96
KIAA0716	RS1859746	gccatagggaacaatcacca	ccatgcccttatatgcttgga	193	0.65
KIAA0716	RS757219	gctcaaaccatgaggattgc	attacgtgggcaagcaaagg	195	0.90
KIAA0716	RS867915	tcccaattcactgctacctctg	ccttgcagtgtgctgcctta	169	0.91
KIAA0716	RS718845	catggttggaagcctgtgtt	tgaaaaccagacacgacctca	168	0.67
KIAA0716	RS1859025	aaggtttggaaagggcaggt	tcccatggtgctttgtatca	224	0.72
KIAA0716	CV2541541RPT.	tgtgggtaatttcacaatttgg	ttcccatctttccagctgtc	180	0.31
KIAA0716	CV2541544	acaggagcccccaaataaat	gacccaaatatcagacccaaaa	178	0.77
KIAA0716	CV339112	ggactttgtgcctggagttg	cagtttctcacctgcttttgc	174	0.80
LAMB1	CVC8856543	ggtgatgttttattttgaagagca	ggaaggagaagtccgttcact	160	0.67
LAMB1	CV11428541	cggacttctccttccagtctt	ggtgggtcttttcacacagg	225	0.67
LAMB1	CV2193685	agggctaagtcctcattctcc	caagatccaaagagcctcca	154	0.67
LAMB1	CV2193686	gatgagaggagggaggaagc	ttcctgtgttttcaaggaagg	184	0.50
LAMB1	CV11428543	cctcaggcctagatggtgag	tcctacctcccctctcttgc	177	0.60
LAMB1	CV2193689	ctgttttgggggttcctttt	cttccctctgattggacagtg	145	0.61
LAMB1	CV3268606	cacagaccttggtcaagcag	agacctttccaagccctgtt	201	0.63
LAMB1	CV2193712	ggctgggatcaactctttca	tccagcttccaaaaagagga	200	0.88
LAMB1	CV152495	tgatctcaagcattcctcctg	gaggattcactacccccaaa	176	0.74
LAMB1	CV2193721	cacgtacacgtgagggtgat	tctgggaacaattcctggag	205	0.88
LAMB1	CV8428961	tgcacgatttaccacttagcc	ggcctttcatcaggcaaat	226	0.60
LAMB1	CV1091266	gaggcctcacagtcataggc	gtggcatgcagttgagtgac	190	0.83
LAMB1	CV2193735	aagacgcctgtcattgctg	aaggcctgattgtgtgtgtg	153	0.52

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