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Table 5 Genotype and allele frequencies of SNPs in HAO1 gene observed in 105 control subjects and 101 patients

From: A whole genome SNP genotyping by DNA microarray and candidate gene association study for kidney stone disease

SNP ID

Genotype

Genotype frequency (%)

OR (95% CI)

P-value*

Allele

Allele frequency (%)

OR (95% CI)

P-value*

Control

Patient

Control

Patient

rs6055363

A/A

44.8

32

1.00

0.06

A

67.6

57

1.00

0.0265

A/G, G/G

55.2

68

1.72 (0.97-3.04)

G

32.4

43

1.57 (1.05-2.36)

rs2294305

A/A

43.8

31

1.00

0.058

A

66.7

56.5

1.00

0.0343

A/G, G/G

56.2

69

1.74 (0.98-3.08)

G

33.3

43.5

1.54 (1.03-2.30)

rs2235250

G/G

44.8

31.7

1.00

0.053

G

68.1

55.9

1.00

0.0110

G/A, A/A

55.2

68.3

1.75 (0.99-3.09)

A

31.9

44.1

1.68 (1.12-2.51)

rs6077285

C/C

28

46.9

1.00

0.0057

C

57.5

66.8

1.00

0.0555

C/G, G/G

72

53.1

0.44 0(0.24-0.79)

G

42.5

33.2

0.67 (0.45-1.01)

rs2294301

C/C

34.3

53.5

1.00

0.0054

C

60

69.8

1.00

0.0373

C/G, G/G

65.7

46.5

0.45 0(0.26-0.80)

G

40

30.2

0.65 (0.43-0.98)

rs2423326

G/G

34.3

54.5

1.00

0.0035

G

60

72.8

1.00

0.0061

G/A, A/A

65.7

45.5

0.44 0(0.25-0.77)

A

40

27.2

0.56 (0.37-0.85)

rs6118004

T/T

33.3

58

1.00

0.0004

T

60

74.5

1.00

0.0018

T/C, C/C

66.7

42

0.36 0(0.21-0.64)

C

40

25.5

0.51 (0.34-0.78)

rs2205818

A/A

35.2

57.4

1.00

0.0013

A

61.9

74.3

1.00

0.0072

A/G, G/G

64.8

42.6

0.40 (0.23-0.71)

G

38.1

25.7

0.56 (0.37-0.86)

rs2142697

T/T

34

56.6

1.00

0.0012

T

61.2

74.2

1.00

0.0050

T/C, C/C

66

43.4

0.40 (0.22-0.70)

C

38.8

25.8

0.55 (0.36-0.83)

rs6140463

G/G

35.2

58

1.00

0.001

G

61.4

74.5

1.00

0.0046

G/A, A/A

64.8

42

0.39 (0.22-0.69)

A

38.6

25.5

0.54 (0.36-0.83)

rs2235245

C/C

35.2

58.4

1.00

0.0008

C

61.4

75.2

1.00

0.0026

C/G, G/G

64.8

41.6

0.39 (0.22-0.68)

G

38.6

24.8

0.52 (0.34-0.80)

rs6086287

A/A

72.4

58.4

1.00

0.035

A

84.8

77.2

1.00

0.0510

A/C, C/C

27.6

41.6

1.87 (1.04-3.34)

C

15.2

22.8

1.64 (0.99-2.70)

rs2255183

T/T

71.4

56.4

1.00

0.025

T

84.3

76.2

1.00

0.0399

T/C, C/C

28.6

43.6

1.93 (1.08-3.44)

C

15.7

23.8

1.67 (1.02-2.74)

  1. OR, odds ratio; CI, confidence interval.
  2. *Uncorrected P-value.
  3. Significant P-values are indicated in bold.