From: Genome-wide methylation profiling of the bronchial mucosa of asthmatics: relationship to atopy
 |  |  |  |  |  |  | BA atopy vs BA non atopy | ||||
---|---|---|---|---|---|---|---|---|---|---|---|
N | TargetID | Gene name | Chr | CpG Coordinate | Position | CpG Island | Beta value of BA atopy (M ± SD) | Beta value of BA non atopy (M ± SD) | DeltaBeta (BA atopy-BA non atopy) | P-value | FDR q-value |
1 | cg15804973 | MAP3K5 | 6 | 137155349 | Promoter | TRUE | 0.37 ± 0.06 | 0.26 ± 0.04 | 0.11 | 0.0005 | - |
2 | cg18201077 | RSAD2 | 2 | 6935359 | Promoter | FALSE | 0.29 ± 0.06 | 0.19 ± 0.03 | 0.11 | 0.001 | 0.005 |
3 | cg24262469 | TIPARP | 3 | 157875073 | Promoter | TRUE | 0.42 ± 0.08 | 0.31 ± 0.03 | 0.11 | 0.004 | - |
4 | cg23123362 | ICF45 | 5 | 157091024 | Promoter | FALSE | 0.39 ± 0.07 | 0.29 ± 0.03 | 0.1 | 0.004 | 0.007 |
5 | cg06987504 | EIF3S6 | 8 | 109330128 | Promoter | TRUE | 0.33 ± 0.08 | 0.22 ± 0.04 | 0.1 | 0.007 | - |
6 | cg27398499 | TACSTD2 | 1 | 58816033 | Promoter | FALSE | 0.41 ± 0.08 | 0.31 ± 0.05 | 0.1 | 0.009 | 0.009 |
7 | cg23989635 | CDH1 | 16 | 67328696 | Gene body | TRUE | 0.16 ± 0.03 | 0.29 ± 0.07 | −0.14 | 0.0001 | - |
8 | cg25368651 | C11orf47 | 11 | 6475107 | Promoter | TRUE | 0.64 ± 0.06 | 0.76 ± 0.02 | −0.12 | 0.0002 | - |
9 | cg25427580 | B3GALT1 | 2 | 168383428 | Gene body | TRUE | 0.63 ± 0.06 | 0.74 ± 0.03 | −0.11 | 0.0003 | - |
10 | cg18885346 | PKHD1 | 6 | 52060382 | Promoter | FALSE | 0.57 ± 0.06 | 0.68 ± 0.04 | −0.11 | 0.0004 | 0.013 |
11 | cg15309006 | LOC63928 | 16 | 23673449 | Gene body | TRUE | 0.16 ± 0.05 | 0.27 ± 0.05 | −0.11 | 0.0005 | - |
12 | cg09272256 | AKR1C4 | 10 | 5228798 | Gene body | FALSE | 0.56 ± 0.07 | 0.68 ± 0.03 | −0.12 | 0.0006 | 0.010 |
13 | cg11532513 | LRTM1 | 3 | 54937112 | Promoter | FALSE | 0.60 ± 0.05 | 0.71 ± 0.05 | −0.11 | 0.0007 | 0.007 |
14 | cg16242770 | KRTAP17-1 | 17 | 36725473 | Gene body | FALSE | 0.71 ± 0.06 | 0.82 ± 0.02 | −0.1 | 0.0007 | 0.006 |
15 | cg00051623 | CASP1 | 11 | 104411067 | Promoter | FALSE | 0.65 ± 0.07 | 0.76 ± 0.03 | −0.12 | 0.0008 | 0.004 |
16 | cg20587168 | MGC33407 | 19 | 8670172 | Gene body | TRUE | 0.33 ± 0.06 | 0.46 ± 0.07 | −0.13 | 0.0009 | - |
17 | cg03355526 | ZNF454 | 5 | 178300830 | Gene body | TRUE | 0.28 ± 0.06 | 0.39 ± 0.05 | −0.11 | 0.001 | - |
18 | cg24648061 | GPR22 | 7 | 106901742 | Gene body | FALSE | 0.50 ± 0.07 | 0.62 ± 0.04 | −0.12 | 0.002 | 0.007 |
19 | cg11237738 | C4orf6 | 4 | 5577784 | Gene body | FALSE | 0.54 ± 0.07 | 0.64 ± 0.02 | −0.1 | 0.002 | 0.006 |
20 | cg03734874 | FLJ42486 | 14 | 104142142 | Promoter | TRUE | 0.23 ± 0.06 | 0.34 ± 0.05 | −0.11 | 0.002 | - |
21 | cg20937139 | PDGFC | 4 | 158111996 | Promoter | TRUE | 0.17 ± 0.06 | 0.28 ± 0.06 | −0.11 | 0.002 | - |
22 | cg26657648 | IL1R1 | 2 | 102136834 | Promoter | FALSE | 0.64 ± 0.07 | 0.75 ± 0.03 | −0.11 | 0.002 | 0.006 |
23 | cg23111544 | REG1A | 2 | 79201092 | Promoter | FALSE | 0.57 ± 0.07 | 0.67 ± 0.03 | −0.1 | 0.002 | 0.005 |
24 | cg07823755 | UGT1A1 | 2 | 234333658 | Promoter | FALSE | 0.71 ± 0.07 | 0.81 ± 0.03 | −0.1 | 0.002 | 0.005 |
25 | cg13112511 | PDE4D | 5 | 58918032 | Promoter | FALSE | 0.59 ± 0.09 | 0.71 ± 0.03 | −0.12 | 0.002 | 0.005 |
26 | cg21717724 | PSMD5 | 9 | 122645027 | Gene body | TRUE | 0.47 ± 0.07 | 0.59 ± 0.06 | −0.12 | 0.002 | - |
27 | cg08509737 | ATG7 | 3 | 11315160 | Gene body | FALSE | 0.68 ± 0.07 | 0.78 ± 0.02 | −0.1 | 0.002 | 0.004 |
28 | cg05333568 | C1orf65 | 1 | 221633391 | Gene body | TRUE | 0.29 ± 0.08 | 0.43 ± 0.08 | −0.14 | 0.003 | - |
29 | cg16398289 | WDR49 | 3 | 168853983 | Promoter | FALSE | 0.56 ± 0.08 | 0.66 ± 0.03 | −0.11 | 0.003 | 0.006 |
30 | cg04527918 | UCN | 2 | 27384634 | Promoter | TRUE | 0.42 ± 0.06 | 0.54 ± 0.08 | −0.12 | 0.003 | - |
31 | cg20088913 | FLJ46363 | 12 | 9997203 | Promoter | FALSE | 0.57 ± 0.07 | 0.67 ± 0.03 | −0.1 | 0.003 | 0.005 |
32 | cg10430690 | KALRN | 3 | 125296275 | Gene body | TRUE | 0.65 ± 0.09 | 0.77 ± 0.02 | −0.11 | 0.004 | - |
33 | cg15381313 | NR1H4 | 12 | 99391810 | Promoter | FALSE | 0.50 ± 0.06 | 0.60 ± 0.07 | −0.1 | 0.004 | 0.006 |
34 | cg17778867 | KRTAP10-8 | 21 | 44856424 | Gene body | FALSE | 0.60 ± 0.09 | 0.71 ± 0.02 | −0.12 | 0.004 | 0.006 |
35 | cg01216369 | SPATA16 | 3 | 174341695 | Promoter | TRUE | 0.64 ± 0.08 | 0.74 ± 0.02 | −0.1 | 0.005 | - |
36 | cg01507173 | IL1F5 | 2 | 113532686 | Gene body | FALSE | 0.59 ± 0.08 | 0.69 ± 0.02 | −0.1 | 0.005 | 0.007 |
37 | cg22152192 | CRYM | 16 | 21221918 | Promoter | FALSE | 0.52 ± 0.08 | 0.63 ± 0.04 | −0.1 | 0.005 | 0.007 |
38 | cg21053323 | SUMO3 | 21 | 45062472 | Gene body | TRUE | 0.20 ± 0.07 | 0.30 ± 0.06 | −0.1 | 0.005 | - |
39 | cg23324787 | RAG2 | 11 | 36576362 | Gene body | FALSE | 0.57 ± 0.08 | 0.67 ± 0.03 | −0.1 | 0.005 | 0.007 |
40 | cg13041032 | MMP13 | 11 | 102331672 | Gene body | FALSE | 0.64 ± 0.08 | 0.74 ± 0.03 | −0.1 | 0.005 | 0.006 |
41 | cg10784090 | CLDN18 | 3 | 139200348 | Promoter | TRUE | 0.59 ± 0.08 | 0.70 ± 0.04 | −0.1 | 0.005 | - |
42 | cg04317399 | HOXA4 | 7 | 27136924 | Gene body | TRUE | 0.26 ± 0.07 | 0.38 ± 0.09 | −0.12 | 0.006 | - |
43 | cg27202708 | C1orf65 | 1 | 221633391 | Promoter | TRUE | 0.22 ± 0.07 | 0.34 ± 0.08 | −0.12 | 0.006 | - |
44 | cg20300655 | CATSPER3 | 5 | 134331513 | Promoter | FALSE | 0.64 ± 0.08 | 0.74 ± 0.02 | −0.1 | 0.006 | 0.007 |
45 | cg10094277 | KERA | 12 | 89976262 | Gene body | FALSE | 0.51 ± 0.09 | 0.62 ± 0.03 | −0.11 | 0.007 | 0.008 |
46 | cg04117029 | UROS | 10 | 127501757 | Promoter | FALSE | 0.60 ± 0.09 | 0.71 ± 0.03 | −0.11 | 0.007 | 0.008 |
47 | cg12588299 | GPR31 | 6 | 167491309 | Promoter | FALSE | 0.50 ± 0.08 | 0.61 ± 0.05 | −0.11 | 0.007 | 0.008 |
48 | cg27269921 | MN1 | 22 | 26527486 | Gene body | TRUE | 0.11 ± 0.03 | 0.23 ± 0.12 | −0.12 | 0.007 | - |
49 | cg10362591 | SLC6A2 | 16 | 54248057 | Promoter | TRUE | 0.21 ± 0.06 | 0.33 ± 0.09 | −0.12 | 0.007 | - |
50 | cg02248486 | HOXA5 | 7 | 27149812 | Gene body | TRUE | 0.47 ± 0.07 | 0.57 ± 0.07 | −0.1 | 0.008 | - |
51 | cg04616566 | THSD4 | 15 | 69807942 | Promoter | FALSE | 0.60 ± 0.09 | 0.72 ± 0.03 | −0.11 | 0.008 | 0.009 |
52 | cg19366178 | GNB5 | 15 | 50270857 | Promoter | FALSE | 0.69 ± 0.09 | 0.79 ± 0.02 | −0.1 | 0.008 | 0.008 |
53 | cg05259765 | PSCD4 | 22 | 36008370 | Promoter | TRUE | 0.66 ± 0.08 | 0.77 ± 0.03 | −0.1 | 0.009 | - |