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Table 3 DNA methylation level of CpGs in genes between BA-atopy and non atopy

From: Genome-wide methylation profiling of the bronchial mucosa of asthmatics: relationship to atopy

       

BA atopy vs BA non atopy

N

TargetID

Gene name

Chr

CpG Coordinate

Position

CpG Island

Beta value of BA atopy (M ± SD)

Beta value of BA non atopy (M ± SD)

DeltaBeta (BA atopy-BA non atopy)

P-value

FDR q-value

1

cg15804973

MAP3K5

6

137155349

Promoter

TRUE

0.37 ± 0.06

0.26 ± 0.04

0.11

0.0005

-

2

cg18201077

RSAD2

2

6935359

Promoter

FALSE

0.29 ± 0.06

0.19 ± 0.03

0.11

0.001

0.005

3

cg24262469

TIPARP

3

157875073

Promoter

TRUE

0.42 ± 0.08

0.31 ± 0.03

0.11

0.004

-

4

cg23123362

ICF45

5

157091024

Promoter

FALSE

0.39 ± 0.07

0.29 ± 0.03

0.1

0.004

0.007

5

cg06987504

EIF3S6

8

109330128

Promoter

TRUE

0.33 ± 0.08

0.22 ± 0.04

0.1

0.007

-

6

cg27398499

TACSTD2

1

58816033

Promoter

FALSE

0.41 ± 0.08

0.31 ± 0.05

0.1

0.009

0.009

7

cg23989635

CDH1

16

67328696

Gene body

TRUE

0.16 ± 0.03

0.29 ± 0.07

−0.14

0.0001

-

8

cg25368651

C11orf47

11

6475107

Promoter

TRUE

0.64 ± 0.06

0.76 ± 0.02

−0.12

0.0002

-

9

cg25427580

B3GALT1

2

168383428

Gene body

TRUE

0.63 ± 0.06

0.74 ± 0.03

−0.11

0.0003

-

10

cg18885346

PKHD1

6

52060382

Promoter

FALSE

0.57 ± 0.06

0.68 ± 0.04

−0.11

0.0004

0.013

11

cg15309006

LOC63928

16

23673449

Gene body

TRUE

0.16 ± 0.05

0.27 ± 0.05

−0.11

0.0005

-

12

cg09272256

AKR1C4

10

5228798

Gene body

FALSE

0.56 ± 0.07

0.68 ± 0.03

−0.12

0.0006

0.010

13

cg11532513

LRTM1

3

54937112

Promoter

FALSE

0.60 ± 0.05

0.71 ± 0.05

−0.11

0.0007

0.007

14

cg16242770

KRTAP17-1

17

36725473

Gene body

FALSE

0.71 ± 0.06

0.82 ± 0.02

−0.1

0.0007

0.006

15

cg00051623

CASP1

11

104411067

Promoter

FALSE

0.65 ± 0.07

0.76 ± 0.03

−0.12

0.0008

0.004

16

cg20587168

MGC33407

19

8670172

Gene body

TRUE

0.33 ± 0.06

0.46 ± 0.07

−0.13

0.0009

-

17

cg03355526

ZNF454

5

178300830

Gene body

TRUE

0.28 ± 0.06

0.39 ± 0.05

−0.11

0.001

-

18

cg24648061

GPR22

7

106901742

Gene body

FALSE

0.50 ± 0.07

0.62 ± 0.04

−0.12

0.002

0.007

19

cg11237738

C4orf6

4

5577784

Gene body

FALSE

0.54 ± 0.07

0.64 ± 0.02

−0.1

0.002

0.006

20

cg03734874

FLJ42486

14

104142142

Promoter

TRUE

0.23 ± 0.06

0.34 ± 0.05

−0.11

0.002

-

21

cg20937139

PDGFC

4

158111996

Promoter

TRUE

0.17 ± 0.06

0.28 ± 0.06

−0.11

0.002

-

22

cg26657648

IL1R1

2

102136834

Promoter

FALSE

0.64 ± 0.07

0.75 ± 0.03

−0.11

0.002

0.006

23

cg23111544

REG1A

2

79201092

Promoter

FALSE

0.57 ± 0.07

0.67 ± 0.03

−0.1

0.002

0.005

24

cg07823755

UGT1A1

2

234333658

Promoter

FALSE

0.71 ± 0.07

0.81 ± 0.03

−0.1

0.002

0.005

25

cg13112511

PDE4D

5

58918032

Promoter

FALSE

0.59 ± 0.09

0.71 ± 0.03

−0.12

0.002

0.005

26

cg21717724

PSMD5

9

122645027

Gene body

TRUE

0.47 ± 0.07

0.59 ± 0.06

−0.12

0.002

-

27

cg08509737

ATG7

3

11315160

Gene body

FALSE

0.68 ± 0.07

0.78 ± 0.02

−0.1

0.002

0.004

28

cg05333568

C1orf65

1

221633391

Gene body

TRUE

0.29 ± 0.08

0.43 ± 0.08

−0.14

0.003

-

29

cg16398289

WDR49

3

168853983

Promoter

FALSE

0.56 ± 0.08

0.66 ± 0.03

−0.11

0.003

0.006

30

cg04527918

UCN

2

27384634

Promoter

TRUE

0.42 ± 0.06

0.54 ± 0.08

−0.12

0.003

-

31

cg20088913

FLJ46363

12

9997203

Promoter

FALSE

0.57 ± 0.07

0.67 ± 0.03

−0.1

0.003

0.005

32

cg10430690

KALRN

3

125296275

Gene body

TRUE

0.65 ± 0.09

0.77 ± 0.02

−0.11

0.004

-

33

cg15381313

NR1H4

12

99391810

Promoter

FALSE

0.50 ± 0.06

0.60 ± 0.07

−0.1

0.004

0.006

34

cg17778867

KRTAP10-8

21

44856424

Gene body

FALSE

0.60 ± 0.09

0.71 ± 0.02

−0.12

0.004

0.006

35

cg01216369

SPATA16

3

174341695

Promoter

TRUE

0.64 ± 0.08

0.74 ± 0.02

−0.1

0.005

-

36

cg01507173

IL1F5

2

113532686

Gene body

FALSE

0.59 ± 0.08

0.69 ± 0.02

−0.1

0.005

0.007

37

cg22152192

CRYM

16

21221918

Promoter

FALSE

0.52 ± 0.08

0.63 ± 0.04

−0.1

0.005

0.007

38

cg21053323

SUMO3

21

45062472

Gene body

TRUE

0.20 ± 0.07

0.30 ± 0.06

−0.1

0.005

-

39

cg23324787

RAG2

11

36576362

Gene body

FALSE

0.57 ± 0.08

0.67 ± 0.03

−0.1

0.005

0.007

40

cg13041032

MMP13

11

102331672

Gene body

FALSE

0.64 ± 0.08

0.74 ± 0.03

−0.1

0.005

0.006

41

cg10784090

CLDN18

3

139200348

Promoter

TRUE

0.59 ± 0.08

0.70 ± 0.04

−0.1

0.005

-

42

cg04317399

HOXA4

7

27136924

Gene body

TRUE

0.26 ± 0.07

0.38 ± 0.09

−0.12

0.006

-

43

cg27202708

C1orf65

1

221633391

Promoter

TRUE

0.22 ± 0.07

0.34 ± 0.08

−0.12

0.006

-

44

cg20300655

CATSPER3

5

134331513

Promoter

FALSE

0.64 ± 0.08

0.74 ± 0.02

−0.1

0.006

0.007

45

cg10094277

KERA

12

89976262

Gene body

FALSE

0.51 ± 0.09

0.62 ± 0.03

−0.11

0.007

0.008

46

cg04117029

UROS

10

127501757

Promoter

FALSE

0.60 ± 0.09

0.71 ± 0.03

−0.11

0.007

0.008

47

cg12588299

GPR31

6

167491309

Promoter

FALSE

0.50 ± 0.08

0.61 ± 0.05

−0.11

0.007

0.008

48

cg27269921

MN1

22

26527486

Gene body

TRUE

0.11 ± 0.03

0.23 ± 0.12

−0.12

0.007

-

49

cg10362591

SLC6A2

16

54248057

Promoter

TRUE

0.21 ± 0.06

0.33 ± 0.09

−0.12

0.007

-

50

cg02248486

HOXA5

7

27149812

Gene body

TRUE

0.47 ± 0.07

0.57 ± 0.07

−0.1

0.008

-

51

cg04616566

THSD4

15

69807942

Promoter

FALSE

0.60 ± 0.09

0.72 ± 0.03

−0.11

0.008

0.009

52

cg19366178

GNB5

15

50270857

Promoter

FALSE

0.69 ± 0.09

0.79 ± 0.02

−0.1

0.008

0.008

53

cg05259765

PSCD4

22

36008370

Promoter

TRUE

0.66 ± 0.08

0.77 ± 0.03

−0.1

0.009

-