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Table 3 CMH top scoring SNPs in LD, approach II.

From: Data mining of high density genomic variant data for prediction of Alzheimer's disease risk

Gene (Chr.) dbSNP RS ID Physical Position Distance to Gene Minor Allele (MAF) p-value from χ2 OR (95% CI)
   APOEε4- SAMPLES    
ST5(11)      
rs4910068 8830651 intron C (0.25) 9.47E-05 1.57 (1.25-1.98)
rs10743089 8744744 intron A (0.33) 2.12E-05 1.59 (1.28-1.97)
   APOE ε4+ SAMPLES    
TRPC1(3)      
rs4259003 144006245 intron A (0.21) 6.82E-05 2.36 (1.53-3.64)
rs9784320 144024724 intron C (0.25) 9.68E-04 1.87 (1.28-2.71)
rs2033912 143999057 intron T (0.22) 1.71E-03 1.86 (1.26-2.75)
rs891159 81526843 intron C (0.24) 2.40E-05 2.34 (1.56-3.49)
ATG10(5)      
rs1485587 81362798 intron G (0.48) 8.11E-05 1.82 (1.35-2.45)
rs4703879 81589571 intron A (0.24) 1.01E-03 1.86 (1.28-2.71)
ANO3(11)      
rs1389421 25747721 upstream 561825 G (0.45) 3.39E-06 2.07 (1.52-2.83)
rs10834774 25715397 upstream 594149 C (0.20) 4.01E-03 1.86 (1.21-2.85)
rs11028909 25729021 upstream 580525 G (0.20) 4.13E-03 1.84 (1.21-2.81)
NDUFA12(12)      
rs249153 93848520 downstream 40719 C (0.19) 3.19E-06 1.63 (1.33-2.00)
rs249154 93848687 downstream 40552 C (0.18) 3.22E-05 1.54 (1.25-1.89)
   APOE ε4+ and ε4- SAMPLES    
NISCH(3)      
rs6784615 52481466 intron C (0.09) 6.63E-07 2.13 (1.57-2.88)
rs9855470 52468315 intron A (0.06) 4.86E-05 2.11 (1.46-3.05)
rs6445486 52481531 intron A (0.06) 2.77E-04 1.90 (1.34-2.71)
rs10865972 52466487 intron C (0.06) 3.38E-04 1.87 (1.32-2.65)
rs4687619 52493826 intron T (0.06) 3.54E-04 1.93 (1.34-2.79)
rs6810027 52499614 intron C (0.05) 5.80E-04 1.89 (1.31-2.73)
  1. All p-values are uncorrected.