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Table 5 Significant (Uncorrected) Analyses of SNPs Previously Reported as NTD Risk Factors in this Population

From: Evaluation of common genetic variants in 82 candidate genes as risk factors for neural tube defects

Gene/SNP

MAF*

Cohort**

Model

OR

95% CI (LL)

95% CI (UL)

P

MTHFR rs1801133 677 C > T

0.32

Combined

LR CC Continuous

1.23

1.05

1.45

0.011

  

Combined

LR CC Recessive

1.26

1.01

1.57

0.041

  

Combined

LR CC Dominant

1.44

1.04

2.00

0.029

  

Combined

LR MC Continuous

1.22

1.04

1.43

0.017

  

Combined

LR MC Recessive

1.25

1.01

1.57

0.045

MTHFD1 rs2236225 R653Q

0.46

Primary

LR MC Continuous

1.35

1.06

1.71

0.014

  

Primary

LR MC Dominant

1.97

1.28

3.04

0.002

  

Combined

LR MC Dominant

1.48

1.14

1.92

0.003

  

Primary

LL Case effect, dominant

0.53

0.30

0.93

0.026

  

Combined

LL TDT

0.80

0.65

0.99

0.039

  

Combined

LL Case effect, dominant

0.60

0.42

0.86

0.005

TCblR rs2336573 G220R

0.04

Combined

LR CC Dominant

.***

  

0.013

  1. *For each SNP, the minor allele was evaluated as the risk allele.
  2. ** Primary: 320 triads, 341 controls. Combined: 570 triads, 999 controls.
  3. *** (.) = Failure to converge. Pexact is shown.