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Table 3 Allele Frequencies of SNPs vs. General Population

From: Polymorphic genes of detoxification and mitochondrial enzymes and risk for progressive supranuclear palsy: a case control study

 

Allele

MAF

Controls

q

Cases

  

Marker

Mn/Mj

popa

MAF

CI

p

Holm

MAF

CI

p

q

rs1135840

G/C

0.43

0.432

0.40-0.47

0.954

1

0.47

0.44-0.50

0.012

0.081

rs3738136

A/G

0.06

0.046

0.03-0.06

0.109

0.543

0.054

0.04-0.07

0.432

1.000

rs1043424

C/G

0.34

0.277

0.25-0.31

< 0.001

0.001

0.26

0.23-0.29

< 0.001

< 0.001

rs2234694

C/A

0.042

0.051

0.04-0.07

0.231

0.925

0.043

0.03-0.06

0.91

1.000

rs4880

C/T

0.45

0.492

0.46-0.53

0.018

0.145

0.526

0.50-0.56

< 0.001

< 0.001

rs662

G/A

0.33

0.297

0.27-0.33

0.048

0.337

0.3

0.27-0.33

0.046

0.273

rs854560

T/A

0.38

0.347

0.31-0.38

0.056

0.337

0.359

0.33-0.39

0.171

0.854

rs705381

T/C

0.18

0.254

0.23-0.29

< 0.001

< 0.001

0.248

0.22-0.28

< 0.001

< 0.001

rs7493

G/C

0.24

0.247

0.22-0.28

0.668

1

0.225

0.20-0.25

0.261

1.000

rs12026

G/C

0.24

0.246

0.22-0.28

0.699

1

0.225

0.20-0.25

0.258

1.000

rs1052553

G/Ab

0.21

0.249

0.22-0.28

0.008

0.068

0.071

0.05-0.09

< 0.001

< 0.001

  1. MAFs of studied population (control/case) compared with the general population (MAF pop) using test of proportions. aMinor allele frequencies listed on NCBI from CEU data (CEU = Utah residents with north and western European ancestry). bNote G = H2, A = H1. Mn/Mj -Minor Allele/Major Allele; MAF = Minor Allele Frequency; CI = 95% confidence intervals for determined MAF for noted population (i.e. control or case); p = p-value (Chi-squared); q = q-values for multiple testing adjustment using Holm's method.