Table 3 Known SNPs discovered via direct sequencing
From: Novel variants in the PRDX6 Gene and the risk of Acute Lung Injury following major trauma
Knowns SNPs | Region | Chr. Position | SNP | MAF in EA (discovery) | MAF in AA (discovery) | MAF in EA (dbSNP) | MAF in AA (dbSNP) |
|---|---|---|---|---|---|---|---|
rs13376447 | 5' UTR | 171709896 | A/G | 0.00 | 0.06 | 0.01 | 0.09 |
rs10753081 | 5' UTR | 171710154 | C/T | 0.39 | 0.30 | 0.73 | 0.21 |
rs34282688 | 5' UTR | 171710819 | C/T | 0.07 | 0.00 | NA | NA |
rs9425722 | 5' UTR | 171711268 | C/T | 1.02 | 0.70 | 0.04 | 0.24 |
rs35152701 | 5' UTR | 171711269 | A/G | 0.02 | 0.00 | 0.00 | 0.00 |
rs12739142 | 5' UTR | 171711278 | A/G | 0.04 | 0.00 | 0.02 | 0.04 |
rs4354572 | 5' UTR | 171711459 | C/T | 1.02 | 0.66 | 0.00 | 0.04 |
rs34619706 | 5' UTR | 171711670 | A/G | 0.09 | 0.02 | 0.07 | 0.04 |
rs4382766 | 5' UTR | 171711699 | C/T | 0.54 | 0.28 | 0.30 | 0.50 |
rs13376392 | 5' UTR | 171711701 | C/T | 0.00 | 0.06 | 0.00 | 0.04 |
rs11576174 | 5' UTR | 171712301 | G/T | 0.04 | 0.00 | 0.15 | 0.00 |
rs34977864 | 5' UTR | 171712466 | G/T | 0.00 | 0.06 | 0.00 | 0.10 |
rs35441546 | 5' UTR | 171712652 | C/T | 0.00 | 0.06 | 0.00 | 0.03 |
rs35133735 | 5' UTR | 171712738 | C/T | 0.00 | 0.06 | 0.00 | 0.00 |
rs6671141 | intron | 171713557 | G/T | 0.26 | 0.26 | 0.24 | 0.30 |
rs35749242 | intron | 171714171 | A/G | 0.00 | 0.12 | 0.00 | 0.03 |
rs35918328 | intron | 171714199 | A/G | 0.00 | 0.02 | 0.00 | 0.10 |
rs35899698 | intron | 171714279 | C/T | 0.00 | 0.10 | 0.00 | 0.00 |
rs33942654 | intron | 171714884 | A/G | 0.26 | 0.18 | 0.23 | 0.33 |
rs35679908 | intron | 171715013 | A/G | 0.00 | 0.02 | 0.00 | 0.00 |
rs9425723 | intron | 171715118 | A/G | 0.33 | 0.62 | 0.23 | 0.63 |
rs9425724 | intron | 171715123 | A/G | 0.33 | 0.54 | 0.23 | 0.53 |
rs7540065 | intron | 171715659 | A/G | 0.33 | 0.56 | 0.23 | 0.53 |
rs35244306 | intron | 171716247 | C/T | 0.00 | 0.14 | 0.00 | 0.07 |
rs4611 | 3'UTR | 171723640 | C/T | 0.33 | 0.50 | 0.77 | 0.47 |
rs3833536 | 3'UTR | 171724172 | C/- | 0.00 | 0.00 | 0.05 | 0.04 |
rs7314 | 3'UTR | 171724222 | A/G | 0.20 | 0.50 | 0.23 | 0.52 |
rs36005931 | 3'UTR | 171724224 | A/G | 0.00 | 0.04 | 0.00 | 0.10 |
rs2000 | 3'UTR | 171724457 | A/G | 0.04 | 0.00 | 0.03 | 0.00 |
rs34129563 | 3'UTR | 171724720 | G/C | 0.11 | 0.00 | 0.02 | 0.03 |
rs9425727 | 3'UTR | 171725216 | G/C | 0.02 | 0.14 | 0.00 | 0.04 |
rs35358649 | 3'UTR | 171725429 | C/T | 0.02 | 0.00 | 0.00 | 0.00 |
rs35547740 | 3'UTR | 171725569 | (-/T) | 0.00 | 0.04 | 0.00 | 0.07 |
rs6702835 | 3'UTR | 171725723 | A/G | 0.33 | 0.48 | 0.23 | 0.54 |
rs60587131 | 3'UTR | 171726777 | G/C | 0.00 | 0.02 | 0.05 | NA |
rs57032935 | 3'UTR | 171726836 | G/C | 0.15 | 0.22 | 0.18 | 0.31 |
rs6664925 | 3'UTR | 171729033 | A/G | 0.00 | 0.18 | 0.00 | 0.16 |