SNP | Group | HWE | Genotype count and frequency | Allele frequency | Allelic p | OR (95%CI) | ||
---|---|---|---|---|---|---|---|---|
 |  |  | Case (frequency) | Control (frequency) | Case | Control |  |  |
 | anti-CCP positive | Case: 0.76 | AA:127 (0.35) | AA:171 ( 0.25) | A: 0.59 | A: 0.52 | 0.0015 | 1.33 (1.11-1.60) |
 |  | Control: 0.058 | AG:173 (0.48) | AG:369 ( 0.54) | G: 0.41 | G: 0.48 |  |  |
 |  |  | GG:63 (0.17) | GG:149 ( 0.21) |  |  |  |  |
 | anti-CCP negative | Case: 0.81 | AA:69 (0.32) | AA:171 ( 0.25) | A: 0.57 | A: 0.52 | 0.040 | 1.25 (1.01-1.56) |
 |  | Control: 0.058 | AG:106 (0.50) | AG:369 ( 0.54) | G: 0.43 | G: 0.48 |  |  |
rs3761847 | Â | Â | GG:38 (0.18) | GG:149 ( 0.21) | Â | Â | Â | Â |
 | RF positive | Case: 0.81 | AA:170 (0.34) | AA:171 ( 0.25) | A: 0.58 | A: 0.52 | 0.0015 | 1.30 (1.10-1.53) |
 |  | Control: 0.058 | AG:237 (0.48) | AG:369 ( 0.54) | G: 0.42 | G: 0.48 |  |  |
 |  |  | GG:89 (0.18) | GG:149 ( 0.21) |  |  |  |  |
 | RF negative | Case: 0.26 | AA:27 (0.34) | AA:171 ( 0.25) | A: 0.61 | A: 0.52 | 0.030 | 1.44 (1.03-2.01) |
 |  | Control: 0.058 | AG:43 (0.54) | AG:369 ( 0.54) | G: 0.39 | G: 0.48 |  |  |
 |  |  | GG:10 (0.16) | GG:149 ( 0.21) |  |  |  |  |
 | anti-CCP positive | Case: 0.22 | AA:139 (0.38 ) | AA:343 (0.50 ) | G: 0.37 | G: 0.29 | 0.00025 | 1.42 (1.18-1.72) |
 |  | Control: 0.54 | AG:180 (0.50 ) | AG:291 (0.42 ) | A: 0.63 | A: 0.71 |  |  |
 |  |  | GG:44 (0.12 ) | GG:55 ( 0.08 ) |  |  |  |  |
 | anti-CCP negative | Case: 0.18 | AA:89 (0.42 ) | AA:343 (0.50 ) | G: 34 | G: 0.29 | 0.065 |  |
 |  | Control: 0.54 | AG:104 (0.49 ) | AG:291 (0.42 ) | A: 0.66 | A: 0.71 |  |  |
rs7021206 | Â | Â | GG:20 (0.09 ) | GG:55 ( 0.08 ) | Â | Â | Â | Â |
 | RF positive | Case: 0.17 | AA:193 (0.39 ) | AA:343 (0.50 ) | G: 0.36 | G: 0.29 | 0.00014 | 1.40 (1.18-1.67) |
 |  | Control: 0.54 | AG:244 (0.49 ) | AG:291 (0.42 ) | A: 0.64 | A: 0.71 |  |  |
 |  |  | GG:59 (0.12 ) | GG:55 ( 0.08 ) |  |  |  |  |
 | RF negative | Case: 0.26 | AA:38 (0.48) | AA:343 (0.50 ) | G: 0.33 | G: 0.29 | 0.29 |  |
 |  | Control: 0.54 | AG:31 (0.39) | AG:291 (0.42 ) | A: 0.67 | A: 0.71 |  |  |
 |  |  | GG:11 ( 0.13 ) | GG:55 ( 0.08 ) |  |  |  |  |