High frequency of known copy number abnormalities and maternal duplication 15q11-q13 in patients with combined schizophrenia and epilepsy

Stewart, Larissa R; Hall, April L; Kang, Sung-Hae L; Shaw, Chad A; Beaudet, Arthur L

doi:10.1186/1471-2350-12-154

Table 4 CNVs in psychiatric screened controls

From: High frequency of known copy number abnormalities and maternal duplication 15q11-q13 in patients with combined schizophrenia and epilepsy

NIMH ID	Sex	Chr.	Start	size(bp)		Genes	Validation ^a	DGV
150-10762	F	2p21	44549759	8313	Loss	PREPL	Cus4	None
150-11782	F	3p26.3	2695544	355319	Loss	CNTN4	Cus3	6 overlap
150-10112	M	3q29	196860921	478408	Gain	DLG1, BDH1	Cat	6 overlap
150-13123	M	6q15	89803425	144012	Loss	SFRS13B, PM20D2, GABRR1	Cus4	None
150-12782	M	5p13.2	37534374	305290	Gain	WDR70, GDNF	Cus3	None
150-12491	M	7p22.1	5667980	255505	Gain	RNF216, ZNF815, OCM	Cat	2 overlap
150-11643	F	7q21.13	88200226	354752	Loss	ZNF804B, MGC26647	Cus4	8 overlap
150-10750^a	F	8p21.3	22211184	167245	Gain	PIWIL2, SLC39A14, PPP3CC	Cus4	2 overlap
150-12293	M	8q12.1	56682642	214806	Gain	TMEM68, TGS1, LYN, RPS20	Cat	4 overlap
150-12964	M	9q21.32	86522765	193620	Gain	5 genes	Cus4	3 overlap
150-10354	M	9q31.1	105642367	226151	Loss	CYLC2	Cus4	1 overlap
150-10750^a	F	9q34.3	140374217	229402	Gain	9 genes	Cus4	None
150-12487	M	12q12	40789970	3711960	Gain	13 genes	Cat	None
150-12111^a	M	12q24.12	112181037	136012	Gain	ACAD10, ALDH2, C12orf47, MAPKAPK5	Cus4	None
150-10678	F	12q24.21	116367980	170923	Gain	MED13L	Cus4	1 overlap
150-10629	M	13q33.1	103192748	327792	Gain	7 genes	Cat	None
150-12138	M	15q11.2	22842143	244550	Gain	TUBGCP5, CYFIP1, NIPA2, NIPA1 ^b	MLPA	Common
150-11886	M	15q11.2	22842143	244550	Gain	TUBGCP5, CYFIP1, NIPA2, NIPA1 ^b	Cat	Common
150-12900	M	15q11.2	22842143	244550	Loss	TUBGCP5, CYFIP1, NIPA2, NIPA1	MLPA	Common
150-11785	F	15q13.3	31730445	694760	Gain	CHRNA7 ^c	Cat	Common
150-11943	M	15q15.1	42656727	32418	Loss	CAPN3	Cus4	None
150-12111^a	M	16p13.3	2147596	18151	Gain	PKD1	Cus4	3 overlap
150-12420	M	17p13.2	4027661	492396	Gain	10 genes^b	Cat	4 overlap
150-10080	M	17p13.1	9993838	416496	Gain	5 genes	Cat	None
150-12837	M	17p11.2	21195549	306380	Gain	MAP2K3, KCNJ12, C17orf51 ^b	Cat	13 overlap
150-12522	M	19q13.11	32809424	217110	Loss	ZNF507, DPY19L3	Cus4	None
150-10660	F	21q22	35720798	185606	Gain	KCNE2, FAM165B, KCNE1, RCAN1	Cus4	Identical
150-10685	M	22q11.21	18900180	2901481	Gain	50 genes	Cat	Common
150-10702	M	Xp22.12	19563240	384858	Gain	SH3KBP1, CXorf23	Cat	None
150-12093	M	Yp11.2	9523339	126272	Gain	8 genes	Cus4	None

Abbreviations: As in Table 1.
^a denotes samples having more than one CNV
^b denotes controls which had a similar call to CNV found in cases

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ISSN: 1471-2350

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