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Table 2 Characteristics of 11 TNF/LTA tag SNPs.

From: Large-scale association analysis of TNF/LTA gene region polymorphisms in type 2 diabetes

dbSNP rs number Position on chr. 6a Alternative name Gene location Alleles (C:M)b dbSNP CEU MAFc
rs928815 31639194 / 5' LTA G:T 0.383
rs909253 31648292 252G > A LTA-intron 1 T:C 0.358
rs746868 31648408 / LTA-intron 1 G:C 0.405
rs1041981 31648763 Thr26Asn;T60N; 804C > A LTA-exon 3 C:A 0.358
rs1800750 31650942 -376 G > A 5' of TNF G:A 0.008
rs1800629 31651010 -308 G > A 5' of TNF A:G 0.217
rs361525 31651080 -238 G > A 5' of TNF G:A 0.068
rs3093662 31652168 IVS1-122A > G; +851 TNF-intron 1 A:G 0.071
rs3093664 31652621 / TNF-intron 3 A:G 0.065
rs3093665 31653370 / TNF - 3'UTR A:C 0.017
rs3093668 31654474 / 3' of TNF G:C 0.042
  1. aBased on UCSC Genome Browser; bC:M - common allele: minor allele; cMAF - minor allele frequency for the CEU population based on NCBI dbSNP database