Skip to main content

Table 2 Characteristics of 11 TNF/LTA tag SNPs.

From: Large-scale association analysis of TNF/LTA gene region polymorphisms in type 2 diabetes

dbSNP rs number

Position on chr. 6a

Alternative name

Gene location

Alleles (C:M)b

dbSNP CEU MAFc

rs928815

31639194

/

5' LTA

G:T

0.383

rs909253

31648292

252G > A

LTA-intron 1

T:C

0.358

rs746868

31648408

/

LTA-intron 1

G:C

0.405

rs1041981

31648763

Thr26Asn;T60N; 804C > A

LTA-exon 3

C:A

0.358

rs1800750

31650942

-376 G > A

5' of TNF

G:A

0.008

rs1800629

31651010

-308 G > A

5' of TNF

A:G

0.217

rs361525

31651080

-238 G > A

5' of TNF

G:A

0.068

rs3093662

31652168

IVS1-122A > G; +851

TNF-intron 1

A:G

0.071

rs3093664

31652621

/

TNF-intron 3

A:G

0.065

rs3093665

31653370

/

TNF - 3'UTR

A:C

0.017

rs3093668

31654474

/

3' of TNF

G:C

0.042

  1. aBased on UCSC Genome Browser; bC:M - common allele: minor allele; cMAF - minor allele frequency for the CEU population based on NCBI dbSNP database