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Table 4 Polymorphisms in the Affymetrix GeneChip® Human Mapping 50K Xba Array in Genes Hypothesized to be Associated with Tuberculosis Pathogenesis

From: Polymorphisms in IL-1β, vitamin D receptor Fok1, and Toll-like receptor 2 are associated with extrapulmonary tuberculosis

Gene # SNPs Gene # SNPs Gene # SNPs
IL-4 4 GATA3 68 IFN-α 5
IL-6 11 TRAF6 3 CYLD 13
IL-8 5 HLA-DQ 5 BCL10 1
IL-10 4 HLA-DR 5 A20 28
IL-12 28 VDR 2 TAK1 7
TNF 191 NOD2/CARD15 1 STAT4 9
IFN-γ 18 NFκ b 50 IL-23 6
IL-1β 2 STAT1 3 TLR4 21
RunX 66 TGF-β 105   
  1. The number of SNPs tested in each gene is provided. There were a total of 661 SNPs.