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Table 4 Haplotype frequencies in PD cases and controls

From: Association of Nrf2-encoding NFE2L2 haplotypes with Parkinson's disease

Haplotypes1

Swedish material

Polish material

 

Parkinson

Control

Parkinson

Control

NFE2L2 tag SNPs 2-6

    

   AGGAG

26.2%

30.6%

33.9%

28.2%

   AAGAG

22.2%

22.0%

20.5%

20.5%

   GAAAA

21.5%

26.7%

18.4%

27.7%

   GAGGG

10.9%

5.5%

9.7%

9.6%

   GAGAA

10.2%

9.1%

9.9%

7.1%

   GAAAG

5.4%

1.7%

1.4%

2.5%

NFE2L2 promoter P1-P3

    

   AGC

47.5%

47.0%

40.8%

48.1%

   GGC

27.2%

31.2%

33.8%

27.0%

   AAC

12.6%

13.8%

12.3%

12.3%

   AGA

12.6%

7.9%

13.1%

12.6%

KEAP1 tag SNPs 1-3

    

   TGC

55.8%

52.7%

---

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   TGG

26.1%

27.7%

---

---

   CGG

11.0%

12.0%

---

---

   TTC

6.7%

7.4%

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  1. Data are presented for haplotypes with frequencies ≥ 5.0% estimated with the EM-algorithm.1For rs-numbers see table 2.