Sequencing of DC-SIGN promoter indicates an association between promoter variation and risk of nasopharyngeal carcinoma in cantonese

Table 2 The minor allele frequencies and Hardy-Weinberg equilibrium tests of 6 variants in DC-SIGN gene

Polymorphism		NCBI rs number	Position^†	Genotype^‡	Gene region	MAF ^§	PH-W^¶	% Geno -typed
Code	Name
1	DC-SIGN -116	--	7718513	G/T	Promoter	0.006	1.00	100.0
2	DC-SIGN -139	rs2287886	7718536	A/G	Promoter	0.275	0.64	100.0
3	DC-SIGN -190	--	7718587	A/G	Promoter	0.003	1.00	100.0
4	DC-SIGN -336	rs4804803	7718733	A/G	Promoter	0.085	0.96	100.0
5	DC-SIGN -871	rs735239	7719268	A/G	5'flanking	0.154	0.58	100.0
6	DC-SIGN -939	rs735240	7719336	G/A	5'flanking	0.222	0.71	100.0

^†The chromosome position listed here is taken from the NCBI database dbSNP build 130.
^‡ First allele is major allele, the second is minor allele.
^§ MAF denotes Minor Allele Frequency.
^¶P_H-W represents the P value of Hardy-Weinberg equilibrium tests.

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