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Table 7 Large CNVs in the Croatia dataset: CNVs longer than 500 Kb in Croatia Cases.

From: Population-based study of genetic variation in individuals with autism spectrum disorders from Croatia

Chromosomal Region (Cytogenetic Coordinate) Copy No. Length (Kb) No. SNPs Start SNP End SNP Genes Individual Sex Age
chr1:144943150-145824905 (1q21.1) 3 882 207 rs6656361 rs11240147 ACP6, BCL9, CHD1L, FMO5, GJA5, PRKAB2 AC0037 m 31
chr2:129716352-130250751 (2q21.1) 1 534 114 rs1251175 rs7578253 HS6ST1 (923711 bp upstream); RAB6C (202954 bp downstream) AC0068 m 9
chr2:199943597-201740672 (2q33.1) 1 1,797 324 rs13028839 rs10200857 AOX1, BZW1, C2orf47, C2orf60, CFLAR, CLK1, FAM126B, FLJ38973, KCTD18, LOC26010, NDUFB3, NIF3L1, ORC2L, PPIL3, SATB2, SGOL2 AC0086 m 11
chr4:189924391-191164126 (4q35.2) 1 1,240 174 rs4863387 rs13120250 FRG1, TUBB4Q AC0025 m 22
chr7:124752465-125591197 (7q31.33) 1 839 132 rs7810309 rs510319 POT1 (395192 bp upstream); GRM8 (274696 bp downstream) AC0058 f 35
chr7:78246495-97499079 (7q21.11-21.3) 3 18,681 3381 rs13308578 rs6960808 ABCB1, ABCB4, ADAM22, C7orf23, CACNA2D1, CD36, CROT, DBF4, DMTF1, GNAI1, GNAT3, GRM3, HGF, KIAA1324L, MAGI2, MGC26647, PCLO, RUNDC3B, SEMA3A, SEMA3C, SEMA3D, SEMA3E, SLC25A40, SRI, STEAP4, ZNF804BCLDN12, FLJ21062, GTPBP10, PFTK1, STEAP1, STEAP2, ZNF804BACN9, AKAP9, ANKIB1, ASB4, ASNS, BET1 AC0015 m 20
chr10:41756307-42461241 (10q11.1-11.21) 3 705 49 rs10909011 rs158389 ZNF33B AC0061 m 17
chr10:54450683-58765948 (10q21.1) 1 4,315 951 rs2249349 rs2928464 PCDH15, ZWINT AC0045 m 33
chr11:124367724-134445626 (11q24.2-q25) 1 10,078 2842 rs6590113 rs11224228 ACAD8, ACRV1, ADAMTS15, ADAMTS8, APLP2, B3GAT1, BARX2, C11orf38, C11orf45, CCDC15, CDON, CHEK1, DCPS, DDX25, EI24, ETS1, FAM118B, FEZ1, FLI1, FOXRED1, GLB1L3, HNT, HYLS1, IGSF9B, JAM3, KCNJ1, KCNJ5, KIRREL3, LOC219854, LOC89944, NCAPD3, NFRKB, OPCML, P53AIP1, PATE, PKNOX2, PRDM10, PUS3, RICS AC0052 f 26
chr12:37835456-42584684 (12q12) 3 4,538 976 rs11170890 rs4488262 ABCD2, C12orf40, KIF21A, LRRK2, SLC2A13CNTN1ADAMTS20, GLT8D3, IRAK4, PDZRN4, PPHLN1, PRICKLE1, PUS7L, TMEM117, TWF1, YAF2, ZCRB1 AC0093 m 17
chr16:15032942-16197033 (16p13.11) 3 1,164 201 rs4985124 rs8056397 ABCC1, ABCC6, C16orf45, C16orf63, KIAA0430, MPV17L, MYH11, NDE1, NTAN1, PDXDC1, RRN3 AC0003 m 31
chr16:21482719-29234430 (16p12.2-11.2) 3 7,175 1266 rs13339281 rs7500911 C16orf65, CDR2, CHP2, COG7, DCTN5, EARS2, EEF2K, ERN2, GGA2, HS3ST2, IGSF6, LOC23117, METTL9, NDUFAB1, OTOA, PALB2, PLK1, POLR3E, PRKCB1, SCNN1B, SCNN1G, UBFD1, UQCRC2, USP31, VWA3ACACNG3, PRKCB1, RBBP6AQP8, ARHGAP17, LCMT1, SLC5A11, ZKSCAN2HS3ST4APOB48R, ATP2A1, ATXN2L, C16orf82, CCDC101 AC0088 m 15
chr17:28980655-29960126 (17q12) 3 979 350 rs11657037 rs11657603 ACCN1, CCL1, CCL11, CCL13, CCL2, CCL7, CCL8, FLJ44815, TMEM132E AC0100 m 13
chr22:48833840-49524956 (22q13.33) 1 691 126 rs137916 rs2285395 ACR, ADM2, ARSA, CHKB, CPT1B, ECGF1, FAM116B, HDAC10, KLHDC7B, LOC164714, LOC440836, MAPK11, MAPK12, MAPK8IP2, MIOX, MLC1, MOV10L1, NCAPH2, PANX2, PLXNB2, SAPS2, SBF1, SCO2, SELO, SHANK3, TMEM112B, TRABD, TUBGCP6 AC0058 f 35