Skip to main content

Table 2 List of markers showing positive association with radiosensitivity

From: Genome wide screen identifies microsatellite markers associated with acute adverse effects following radiotherapy in cancer patients

Number

Marker

Chr

Position in hg18*

Sequence of PCR primers

Pvalue

FDR

   

5'-end

3'-end

Forward

Reverse

1st

2nd

 

1

D5S0329i

5

33286356

33286817

GAAAGAATTACACTTTGCCAA

AATTGAGATGTCTAAAGGCATC

2.549E-05

5.916E-18

3.897E-15

2

D6S0876i

6

82039209

82039634

ACCACAATAAGATATCACCTCAC

CATTACATTCATGCATACACATAC

0.0263

6.518E-14

1.717E-11

3

D3S0313i

3

104474152

104474509

AACCATCAGATCTTGTTAGAATTA

GTAGTGGTACAGGCCTGTAGT

2.409E-07

2.082E-11

3.048E-09

4

D1S0494i

1

199551754

199551974

GTGTAAGAGCCAGCTGGAC

TCTTGTTTGTGTCTGGTATTAGG

0.0066

8.736E-11

1.151E-08

5

D3S0923i

3

105397288

105397735

GGTATCATTTATCTGGATCCAC

AATTCTTTCAGATGAAAGGAAG

4.025E-04

1.714E-10

2.052E-08

6

D5S0365i

5

111127178

111127405

ACACAAATAAGCATGCGC

CCAGATTATCCTACCACGC

1.127E-08

1.127E-08

9.279E-07

7

D14S0444i

14

26355444

26355548

TCATAGCACTTATCACTACCTTAGG

GATGAAGCCAAGGAGGAG

3.863E-08

8.37E-08

5.80E-06

8

D7S0192i

7

24587185

24587633

ATTACCATTATGGTAGGCTGAATA

GCCAGACATTTGAAATCAGTAT

0.0025

3.53E-07

1.95E-05

9

D5S0292i

5

117035880

117036332

ACTTATAGGTCAGCAACCATTC

GCAATTAGATGGCATTAAATTA

2.82E-04

2.27E-06

8.80E-05

10

D17S945

17

9763962

9764159

AACCAATCTGGACTCCCC

CCTGAAGCCTGACCCC

4.52E-04

2.70E-06

1.02E-04

11

D4S0813i

4

122056656

122057077

TCTTCAGCATTCAGAATATGAT

CAAATTGTCTTTGTTATGTACCTC

4.98E-04

3.66E-06

1.27E-04

12

D8S0809i

8

121379855

121380093

AAGTTATTTATACCAAGTGATGGTG

TCCTAGGATCCTAAGATATAAATCTG

0.0455

3.89E-06

1.32E-04

13

D5S1310i

5

2137543

2137692

AGCCTTCACTCGTGTTCTTAC

AAATAGGAGGACAGAGTAGCAGAG

4.72E-04

8.25E-06

2.41E-04

14

D7S1017i

7

135196215

135196636

ACTGTTCTCATGGTAGTGAATAAG

CTCTTCCTCGTTTGTAGACAC

0.0039

8.78E-06

2.52E-04

15

D9S0704i

9

82887428

82887533

TGCCATGACTGTCTTTCC

TGGAACAAATGATATCAAGAGATAG

0.006

3.02E-05

6.22E-04

16

D7S0072i

7

147781781

147782230

TTCATGAATCCTCAACTATTAAAG

GCTTACTACCTGGTTAATGAAATA

0.0081

2.11E-04

0.0030

17

D20S0325i

20

47715303

47715449

GTTATGATCATGTCACTGCAC

CCTTAGGACTTGATGTTTCTTC

0.0069

2.39E-04

0.0034

18

D10S0385i

10

7092531

7092986

GGATAACTCCAAGATTTCTGAC

GATTAACATGTAAATAGGCAGACT

0.0143

2.90E-04

0.0038

19

D8S0335i

8

116305649

116306128

TTAATATTGATAACATCTTGCGA

CCTTATGACAAATCTTTTCTGAG

0.0266

4.40E-04

0.0053

20

D3S0046i

3

6944093

6944453

ATGGCCATGTTATGATGTTAAT

TGACAGAGCTAGACTCTTGTCAG

0.0247

4.98E-04

0.0054

21

D14S0356i

14

75942526

75942991

TACTCAAATGTCACATTGGTTA

CAGACTAATCAATAACAGAGGACT

8.30E-04

5.00E-04

0.0054

22

D15S966

15

96766304

96766555

TGCTGCTCACGAACTTTT

CCTCTTGGGAACTGTGTAGTATT

0.0142

4.87E-04

0.0054

23

D9S0416i

9

7107471

7107725

AATATTACCTTATTGTTGAGTAAATGC

CCAACAATATAATTTAGGAAGAGC

0.0187

0.0014

0.0127

24

D13S0138i

13

100138248

100138637

AGACTCATCTCCTACCTTTCAC

TAAGAATCCATATGTTGCTGAC

0.0017

0.0017

0.0147

25

D9S0242i

9

8735688

8736162

CGTTTGTAATTGAACGAATAAC

CACCTTGTCACAATTACTCAAC

0.0087

0.0019

0.0160

26

HUMUT6930B

21

39672158

39672587

CGGAGGTTGCAGTGAGTTG

GGGAAGGCTATGGAGGAGA

0.0007

0.0022

0.0174

27

D8S0912i

8

89632493

89632925

GGATGTCTTGTCTTACATTCTCTAG

CAGGTGTCTACTAAACCATCTGAC

0.0231

0.0023

0.0178

28

D6S0444i

6

9065374

9065718

AATTAAGAGTGATCTGAGCAGAAG

TCAAATTTGGTGACCTTAACAG

0.0016

0.0023

0.0182

29

D5S0803i

5

23507111

23507556

TGGTATTAATCTGTTAATGAGGAC

GAATCAACCTAAGTGTACATCAAC

0.0357

0.0024

0.0186

30

D18S0429i

18

487260

487643

CGGATCACCATATAGTGAAAC

GAATTAGAAAGTCACGTTGGTAC

0.0269

0.0026

0.0194

31

HUMUT544

11

123087682

123087978

ACTTCAGCCTCGGTGACAG

TGTTCTGCCTCTGTTGTTAC

0.0453

0.0027

0.0202

32

D4S0317i

4

64967890

64968058

GATACAATTGGTACTGCAAAATAC

TCCTAAGTTCCTAAAGAATCACTC

0.0000

0.0030

0.0215

33

D8S0674i

8

60955922

60956375

TTTCTAATCCATCTGTCAATAAAG

AGTCACTATGCATAGACCACAC

0.0004

0.0031

0.0220

34

D7S2422

7

51105545

51105739

GCTCCACATTCCTTGGGTA

AAGTGAGGGCCTTTCAAAC

0.0131

0.0037

0.0249

35

D10S0463i

10

73857334

73857571

AGAGTAAATCCTCTCCTCATACAAG

TTGCACAGTTCAGAAGCC

0.0046

0.0045

0.0288

36

D8S0225i

8

30387109

30387478

CAGTTGGAATAAATCAGTGAAC

CTGGCTAACATGGTGAAAC

0.0077

0.0070

0.0370

37

D10S0809i

10

48104477

48104600

GCTAGTGTTGGGAGTCAGC

AGGTGAGCCAGTTTCCAG

0.0123

0.0068

0.0370

38

D20S0115i

20

36321601

36321804

ATACTGGCACAAACGCATC

TTAGACTCAGCTATGGAAAGTCAG

0.0013

0.0068

0.0370

39

D12S0456i

12

64866094

64866556

ATTTACCTATGTAACAAACTGCAC

CACAGACTTAATGGATAAGCAG

0.0042

0.0075

0.0383

40

D4S0132i

4

30434753

30434922

CCAGAAGATAGAAGGAGAATCAC

TCTTGATGGTTGGCTGTC

0.0300

0.0085

0.0401

41

D7S0338i

7

83663532

83663831

CTTAACAATACTGGCTGATCAATAG

CATTGTCACTACAGCTTTCATTAC

0.0013

0.0088

0.0413

42

D12S0341i

12

33909083

33909516

TCAAACCTTCATCTTTGTACTTAG

AACTGGCTTCTATCTCACCTAT

0.0223

0.0089

0.0416

43

D1S0288i

1

33214510

33214921

ATACTGTACTTCATGCCATAAGAC

GAGAAATACGGCTGGTGTA

0.0000

0.0092

0.0425

44

D1S1215i

1

241929347

241929516

CTGCAGTCACAACTGGTTAAG

TTGATAACAGCATACTTCAACATAG

0.0027

0.0097

0.0430

45

D12S1657

12

96183565

96183714

TCCTAAAGATGGTGTGCAT

AAGTTCCAATGTTAGTGAACC

0.0431

0.0100

0.0435

46

D16S0497i

16

59449366

59449516

GTAAATCCAATATCTTGCCTACAG

TTCAGGTTCTCCATGTCAAC

0.0361

0.0104

0.0446

47

D10S0107i

10

119415495

119415711

ACAGGCAATCTGATAGTTTAAGAG

AATTGACTCAAGGTTCTGCAG

0.0254

0.0112

0.0469

  1. * hg18: human genome assembly version 18
  2. Abbreviation: Chr = Chromosome,