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Table 5 Identified Haplotypes for LD region 1 based on the SNPs rs2891168, rs1333042, rs1333045, rs10757278, and rs1333048 as derived from the HAPMAP data

From: Replication of the association of chromosomal region 9p21.3with generalized aggressive periodontitis (gAgP) using an independent case-control cohort

Derived Haplotype

Total Haplotype Frequency

GGCGC

0.480

AATAA

0.441

AACAA

0.050

GGTAC

0.020

AACGC

0.005

AATGC

0.005

  1. The five SNPs rs2891168, rs1333042, rs1333045, rs10757278, and rs1333048 were used to determine the minimal number of haplotypes and the corresponding frequencies present in LD region 1 as derived from the HAPMAP data set. The postulated causative C residue within the three putative risk haplotypes is shown in boldface.