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Table 1 Pairwise linkage disequilibrium, presented as D' and r2 values, among the nine variants in UCP2 and UCP3 genes (haploblocks are shown bolded)

From: Variation in the UCP2 and UCP3genes associates with abdominal obesity and serum lipids: The Finnish Diabetes Prevention Study

 

SNP ID

D'

  

DelIns

rs660339

rs659366

rs653529

rs15763

rs1726745

rs3781907

rs11235972

rs1800849

r2

DelIns

(0.297)

 

0.977

0.684

0.630

0.906

0.402

0.829

0.856

0.857

 

rs660339 CT (0.470)

0.451

 

0.985

0.912

0.862

0.548

0.282

0.056

0.053

 

rs659366 GA (0.403)

0.292

0.736

 

0.952

0.867

0.844

0.218

0.133

0.134

 

rs653529 AG (0.415)

0.236

0.663

0.863

 

0.902

0.805

0.243

0.119

0.125

 

rs15763 GA (0.218)

0.542

0.232

0.309

0.318

 

1.0

0.871

0.934

0.933

 

rs1726745 GA (0.403)

0.046

0.181

0.325

0.311

0.188

 

0.756

0.948

0.940

 

rs3781907 AG (0.327)

0.140

0.034

0.016

0.020

0.102

0.189

 

0.804

0.807

 

rs11235972 GA (0.371)

0.181

0.002

0.015

0.012

0.142

0.358

0.535

 

1.0

 

rs1800849 CT (0.377)

0.185

0.002

0.016

0.013

0.145

0.360

0.527

0.979

 
  1. Major/minor alleles, and the frequencies of the minor alleles of the corresponding variants are indicated next to each variant identification number
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BMC Medical Genetics

ISSN: 1471-2350

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