Table 3 Top repeated occurrences from 52,554 unique SNPs among 56,411 SNP-phenotype associations.
From: An Open Access Database of Genome-wide Association Results
SNPid | Repeat assoc. | Gene(s) | Trait(s) | P value range | Chr | Position | Gene size | SNP on platforms? | Perfect CEU LD proxies on other platforms? |
|---|---|---|---|---|---|---|---|---|---|
rs4420638 | 11 | APOE/APOC cluster | Lipids, Alzheimer's, CAD | 1.7E-4 to 1.0E-60 | 19 | 50114786 | 4 kb | Affymetrix, Illumina | Y |
rs599839 | 8 | PSRC1 (near CELSR2, SORT1) | Lipids, CAD | 2.2E-5 to 1.2E-33 | 1 | 109623689 | 88 kb | Affymetrix, Illumina | Y |
rs693 | 8 | APOB | Lipids | 6.8E-4 to 1.0E-21 | 2 | 21085700 | 43 kb | Affymetrix, Illumina | Y |
rs17482753 | 6 | LPL | Lipids | 3.6E-5 to 5.9E-19 | 8 | 19876926 | 29 kb | Affymetrix | Y |
rs780094 | 6 | GCKR | Triglycerides, Crohn's | 6.0E-3 to 1.0E-15 | 2 | 27594741 | 27 kb | Affymetrix, Illumina | Y |
rs1801282 | 6 | PPARG | TypeII, Alzheimer's, Obesity | 4.5E-2 to 1.7E-6 | 3 | 12368125 | 146 kb | Affymetrix, Illumina | Y |
rs910049 | 5 | MHC locus (C6orf10) | TypeII, TypeI, MS, CAD | 7.8E-4 to 3.0E-93 | 6 | 32423705 | 79 kb | Affymetrix, Illumina | Y |
rs2076530 | 5 | MHC locus (BTNL2) | MS, TypeI, RA | 3.2E-10 to 6.7E-74 | 6 | 32471794 | 12 kb | Affymetrix, Illumina | Y |
rs7901695 | 5 | TCF7L2 | TypeII, Waist:Height | 2.6E-4 to 1.0E-48 | 10 | 114744078 | 216 kb | Affymetrix, Illumina | Y |
rs7903146 | 5 | TCF7L2 | TypeII | 5.5E-8 to 1.0E-48 | 10 | 114748339 | 216 kb | Illumina | N |
rs4506565 | 5 | TCF7L2 | TypeII, BMI | 8.6E-4 to 2.3E-31 | 10 | 114746031 | 216 kb | Affymetrix | N |
rs10503669 | 5 | LPL | Lipids | 9.1E-4 to 3.9E-22 | 8 | 19891970 | 29 kb | Affymetrix | Y |
rs562338 | 5 | APOB | Lipids | 2.2E-6 to 5.6E-22 | 2 | 21141826 | 43 kb | Affymetrix | Y |
rs11209026 | 5 | IL23R | Crohn's, Psoriasis | 4.8E-4 to 6.6E-19 | 1 | 67478546 | 93 kb | Affymetrix, Illumina | Y |
rs8050136 | 5 | FTO | BMI, TypeII | 9.8E-7 to 7.3E-14 | 16 | 52373776 | 410 kb | Affymetrix, Illumina | Y |
rs9939609 | 5 | FTO | BMI, TypeII | 1.9E-6 to 9.0E-12 | 16 | 52378028 | 410 kb | Affymetrix | Y |
rs4970834 | 5 | CELSR2 (near SORT1, PSRC1) | Lipids, CAD | 3.4E-4 to 3.0E-11 | 1 | 109616403 | 26 kb | Affymetrix, Illumina | Y |
rs1111875 | 5 | HHEX | TypeII | 1.4E-3 to 5.7E-10 | 10 | 94452862 | 6 kb | Affymetrix, Illumina | Y |
rs13266634 | 5 | SLC30A8 | TypeII | 3.3E-6 to 5.3E-8 | 8 | 118253964 | 42 kb | Illumina | N |
rs968671 | 5 | GABRG3 | BMI, Hypertension | 3.3E-4 to 2.5E-6 | 15 | 25036654 | 650 kb | Affymetrix | N |
rs7034356 | 5 | RAPGEF1 | BMI | 3.7E-4 to 1.3E-5 | 9 | 133468838 | 161 kb | Affymetrix | Y |
rs4740294 | 5 | RAPGEF1 | BMI | 8.3E-4 to 1.3E-5 | 9 | 133462842 | 161 kb | Affymetrix | Y |
rs481843 | 5 | Intergenic (near APO cluster, BUD13) | Lipids, Alzheimer's | 9.3E-4 to 2.1E-5 | 11 | 116031077 | - | Affymetrix | Y |
rs2889849 | 5 | PIGU | BMI, Lipids | 8.8E-4 to 1.9E-4 | 20 | 32627938 | 117 kb | Affymetrix, Illumina | Y |
rs10498015 | 5 | SPAG16 | Lipids, Hgt, Wgt | 9.7E-4 to 1.2E-4 | 2 | 214425824 | 165 kb | Affymetrix, Illumina | Y |