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Table 1 NOS2A htSNP gene position, minor allele frequencies (MAF), successful genotype call rates and Hardy-Weinberg equilibrium p-values (HWE P) in Malawi IPD cases and controls

From: Nitric oxide synthase 2A (NOS2A) polymorphisms are not associated with invasive pneumococcal disease

Reference SNP

Position

Nucleotide substitution

MAF case

MAF control

Call rate

HWE P

rs8078340

5' near gene

G>A

0.27

0.24

0.97

0.13

rs2779248

5' near gene

T>C

0.46

0.45

0.99

0.70

rs16966563

Exon 4 Pro68Pro

T>C

0.26

0.26

0.97

0.95

rs3794763

Intron 5

G>A

0.27

0.27

0.98

0.43

rs1137933

Exon 10 Asp385Asp

C>T

0.14

0.17

0.97

0.85

rs17718148

Intron 11

C>T

0.13

0.16

0.98

0.45

rs4796052

Intron 11

C>T

0.20

0.21

0.98

0.83

rs2297518

Exon 16 Leu608Ser

G>A

0.25

0.25

0.33

0.36

rs2314809

Intron 17

T>C

0.39

0.38

0.97

0.61

rs2297512

Intron 20

A>G

0.16

0.16

0.97

0.92