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Table 6 Test for trend in risk of scarring trachoma or trichiasis with copy number for each haplotype.

From: Innate immunity in ocular Chlamydia trachomatis infection: contribution of IL8 and CSF2 gene variants to risk of trachomatous scarring in Gambians

HAP

SNPa

CLR test for trend

         

Scarring trachoma

Trichiasis

 

1A

2A

3A

4A

5A

6A

7A

8A

OR

95%CI

p value

OR

95%CI

p value

H1

T

C

C

G

T

C

G

C

1.300

1.002,1.670

0.048

1.322

0.980,1.790

0.071

H2

-

-

-

-

T

C

G

-

1.086

0.854,1.380

0.502

1.242

0.935,1.645

0.135

L1

T

C

C

G

A

T

A

C

0.839

0.555,1.267

0.403

0.656

0.405,1.060

0.087

L2

-

-

-

-

A

T

A

-

0.755

0.567,1.005

0.065

0.617

0.438,0.870

0.006

  1. OR >1 indicates an increase in risk with copy number and OR <1 a decrease.
  2. aRefer to table 4 for SNP information