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Table 4 list of haplotype tagging SNPs on chromosome 5q genotyped in 373 case-control pairs.

From: Innate immunity in ocular Chlamydia trachomatis infection: contribution of IL8 and CSF2 gene variants to risk of trachomatous scarring in Gambians

SNP position in haplotype A or B SNP ida Chromosome position Database id SNP genomic location COMMON allele (minor allele) Allele frequency
1A IL3_2069783 131471923 rs2069783 5'UTR T(c) 0.18
2A IL3_31480 131472548 rs31480 5'UTR G(a) 0.05
3A IL3_40401 131472694 rs40401 exon C(t) 0.45
4A IL3_31481 131473418 rs31481 intron G(a) 0.14
5A CSF2_27348 131483355 rs27348 3'UTR T(a) 0.39
6A CSF2_2069614 131483817 rs2069614 3'UTR T(c) 0.45
7A CSF2_27438 131489471 rs27438 3'UTR A(g) 0.23
8A CSF2_2069632 131489516 rs2069632 3'UTR C(t) 0.27
1B IL13_46457 132072180 rs20541 exon C(t) 0.14
2B IL13_46578 132072059 rs1295686 splice site A(g) 0.27
3B IL13_49612 132069025 rs1800925 5'UTR G(a) 0.40
4B IL4-589 132085370 rs2243250 5'UTR T(c) 0.27
5B IL4+33 132085926 rs2070874 exon C(t) 0.49
6B IL4_2243251 132086003 rs2243251 5'UTR T(c) 0.19
7B IL4_2227284 132088941 rs2227284 intron A(c) 0.05
8B IL4_2243270 132090325 rs2243270 intron C(t) 0.27
  1. SNPs given in bold were selected for typing in the complete sample set of 651 case-control pairs
  2. aSNPs given in bold were selected for typing in the complete sample set of 651 case-control pairs.
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BMC Medical Genetics

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