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Table 1 Haplotype tagging SNPs on chromosome 4q genotyped in 373 Gambian case-control pairs

From: Innate immunity in ocular Chlamydia trachomatis infection: contribution of IL8 and CSF2 gene variants to risk of trachomatous scarring in Gambians

SNP position in haplotype SNP ida Chromosome position Database id SNP genomic location COMMON allele (minor allele) Allele frequency
1 AFP+8865 74300068 rs2298839 intron/exon A(g) 0.41
2 AFM+1666 74338382 rs1894292 intron A(g) 0.24
3 AFM+4530 74341246 rs1894293 intron G(a) 0.33
4 AFM+15790 74352506 rs1158101 intron/exon C(t) 0.14
5 IL8-251 74595248 rs4073 promoter A(T) 0.14
6 IL8+396 74595893 rs2227307 intron T(g) 0.47
7 IL8+37674 74633165 rs13109146 flanking C(t) 0.04
8 IL8+39739 74635230 rs39739 flanking G(a) 0.04
9 IL8+40050 74635538 rs2224434 flanking C(a) 0.14
  1. a SNPs given in bold were selected for typing in the complete sample set of 651 case-control pairs.