From: Genetic analysis of impaired trimethylamine metabolism using whole exome sequencing
Variants | Chr | Pos | Gene | MAF | Subject IDa |
---|---|---|---|---|---|
SNPs in oxidoreductase pathways | |||||
 rs61733458 | 3 | 148,916,215 | CP | 0.0110 | 52 |
 rs34625494 | 17 | 41,002,169 | AOC2 | 0.0032 | 62 |
 rs72947591 | 18 | 9,887,167 | TXNDC2 | 0.0179 | 52 |
 rs116368403 | 19 | 41,600,254 | CYP2A13 | 0.0046 | 122 |
Indels in oxidoreductase pathways | |||||
 1 bp insertion | 10 | 102,295,637 | HIF1AN | 0.0200 | 114 |
SNPs in DMGDH interactome | |||||
 rs58580238 | 5 | 78,378,644 | BHMT2 | 0.000154 | 56 |
 rs35664470 | 9 | 136,584,082 | SARDH | 0.00692 | 99 |
 rs78909145 | 17 | 18,243,524 | SHMT1 | 0.00701 | 98 |
SNPs shared by at least two subjects | |||||
 rs73891273 | 3 | 196,235,191 | SMCO1 | 0.0445 | 62 & 99 |
 rs77469804 | 6 | 110,679,450 | METTL24 | 0.0262 | 114 & 122 |
 rs77749341 | 7 | 149,462,317 | ZNF467 | 0.0142 | 99 & 114 |
 rs7091756 | 10 | 1,094,906 | IDI1 | 0.0207 | 35 & 56 |
 rs7956250 | 12 | 93,966,693 | SOCS2 | 0.0257 | 99 & 122 |
 rs55739813 | 15 | 41,803,754 | LTK | 0.0367 | 35 & 52 |
 rs138735905 | 19 | 17,638,121 | FAM129C | 0.0193 | 64 & 98 |
 rs114989947 | 22 | 17,265,194 | XKR3 | 0.0344 | 99 & 113 |
 rs41305431 | X | 103,495,552 | ESX1 | 0.0266 | 113 & 114 |
Indels shared by at least two subjects | |||||
 1 bp insertion — | 1 | 158,533,298 | OR6P1 | 0.0100 | 62 & 122 |