Association analysis of chromosome 1 migraine candidate genes

BMC Medical Genetics

Table 1 A detailed summary of all variants selected for this study

GENE	Ref SNP ID	Chromosome location	Coding	Alleles	Translation	AA change	Minor allele freq	Restriction enzyme	Restriction site	RE Digest fragement (bp)
KCNJ10	rs1130183	C1q23.2	yes, exon2	C/T	non-syn	Arg-Cys	T = 0.0240	Ear I	CTCTTC	614,376,238,8
KCNJ9	rs2494211	C1q23.2	no,3'-UTR	T/C	Nil	nil	C = 0.28	Rsa I	GTAC	382,204,178
ATP1A4	rs6427504	C1q23.3	yes, exon3	T/C	non-syn	Gly-Asp	C = 0.337	Bcc I	CCATC	365,249,116
CASQ1	rs3747623	C1q23.3	no, intron3	T/C	nil	nil	C = 0.481	Hph I	TCACC	245,189,116,56
CACNA1E	rs704326	C1q25.3	yes, exon43	G/A	non-syn	Ala-Thr	G = 0.390	AciI	CCGC	153,109,44
FasL	nil	C1q25.2	No,3'-UTR	CA rpt	nil

ISSN: 1471-2350