Skip to main content

Table 1 Primers for PCR and sequencing

From: Genomic characterization of five deletions in the LDL receptor gene in Danish Familial Hypercholesterolemic subjects

Deletion

PCR primers

Fragment size*

Annealing temperature

Sequencing primers

Promoter – exon1

F: gtccgaggaaggtcacagaa

R: cagcacacaaatgaggtggt

3.5 kb

60

R: cagcacacaaatgaggtggt

Exon5

F: gtggtctcggccatccatcc

R: tctgcaagccgcctgcaccg

1.3 kb

72**

R: tctgcaagccgcctgcaccg

Exon7 – 8

F: tcctccttcctctctctggc

R: gctgcaggcaggggcgacgc

3 kb

63

R: aaagccaggcacggtggctc

Exon9 – 14

F: ggctacaagtgccagtgtga

R: agctgacctttagcctgacg

2 kb

59

F: tttttgagacagagtctca

R: aaagtccaaaatcaggcc

Exon 13 – 15

F: tctccttatccacttgtgtgtctag

R: gctttggtcttctctgtctttgaat

8 kb

58

F: tagccaggtgtggtggcagg

R: ctgggagtagctaggactgc

  1. F: forward primer, R: reverse primer
  2. * Fragment size for PCR fragment of the mutant allele
  3. ** Two-step PCR, 72°C 1:30 min; 98°C 10sec