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Table 2 Association results derived from linear regression between 11 9p21.3-variants and severity of disease (defined as quantitative trait) in the Italian study (N=2,908) stratified by T2D

From: Assessment of the 9p21.3 locus in severity of coronary artery disease in the presence and absence of type 2 diabetes

     

Without T2D (N=2,343)

With T2D (N=565)

SNP

Position

Alleles

MAF

P int

Beta

s.e.

P

P emp

Beta

s.e.

P

P emp

rs7044859

22,008781

A/T

0.463

7.14E-01

0.011

0.028

6.94E-01

9.99E-01

0.024

0.054

6.52E-01

9.99E-01

rs10965215

22,019,445

A/G

0.435

6.82E-01

0.023

0.027

3.93E-01

9.27E-01

0.053

0.052

3.09E-01

8.79E-01

rs564398

22,019,547

C/T

0.301

7.66E-01

0.063

0.030

3.32E-02

1.70E-01

0.032

0.058

5.79E-01

9.96E-01

rs7865618

22,021,005

A/G

0.304

-

0.068

0.029

1.99E-02

1.09E-01

0.030

0.059

6.15E-01

9.98E-01

rs10116277

22,071,397

G/T

0.390

9.83E-02

0.054

0.029

6.01E-02

2.78E-01

0.138

0.067

4.07E-02

2.24E-01

rs4977574

22,088,574

A/G

0.398

9.53E-02

0.087

0.028

1.72E-03

1.17E-02

0.177

0.055

1.21E-03

9.40E-03

rs2383207

22,105,959

A/G

0.360

5.33E-02

0.081

0.029

5.37E-03

3.39E-02

0.198

0.069

4.52E-03

2.91E-02

rs10738610

22,113,766

A/C

0.386

4.28E-02

0.045

0.029

1.14E-01

4.53E-01

0.201

0.067

2.92E-03

1.99E-02

rs10757278

22,114,477

A/G

0.416

2.44E-01

0.019

0.028

5.01E-01

9.77E-01

0.107

0.054

4.61E-02

2.47E-01

rs1333049

22,115,503

C/G

0.421

6.44E-01

0.028

0.028

3.25E-01

8.60E-01

0.099

0.053

6.26E-02

3.16E-01

rs10811661

22,124,094

C/T

0.206

9.85E-01

0.053

0.035

1.26E-01

4.86E-01

0.051

0.068

4.56E-01

9.74E-01

  1. MAF, minor allele frequency; P int, p-value from interaction tests by T2D as shown in Additional file 1: Table S5; Genetic effects (betas) adjusted according to model: severity of CAD ~ age+sex+SNP; Boldface allele denotes coded allele; Boldface P value denotes statistical nominal significance <0.05; P emp denotes empirical significance derived from 10,000 permutations on the 9p21.3 region including the 11 SNPs tested.