Gene | SNP ID | Amino acid substitution | Allele frequency | OR(95% CI)1 | P-value | |
---|---|---|---|---|---|---|
 |  |  | Controls (n = 503) | Cases (n = 369) |  |  |
NOD2 | rs2066844 | p.R702W | 0.02 | 0.04 | 1.85 (1.08-3.18) | 0.03 |
 | rs2066845 | p.G908R | 0.04 | 0.11 | 3.23 (2.15-4.85) | 6.39*10-9 |
 | rs2066847 | p.L1007fs2 | 0.02 | 0.11 | 5.18 (3.26-8.25) | 2.03*10-12 |
 | Carriage3 |  | 0.14 | 0.34 | 4.13(3.00-5.67) | 1.49*10-19 |
 | Compound Hetero/Homozygous4 |  | 0.01 | 0.09 | 8.68 (3.61-20.87) | 1.10*10-8 |
 | rs17221417 | intron 2 | 0.22 | 0.38 | 2.13 (1.73-2.63) | 1.32*10-12 |
 | rs2076756 | intron 8 | 0.22 | 0.39 | 2.26 (1.83-2.79) | 6.50*10-14 |
IL23R | rs11209026 | R381Q | 0.07 | 0.02 | 0.27 (0.16-0.48) | 4.73*10-6 |
 | rs7517847 | intron 6 | 0.38 | 0.25 | 0.55 (0.43-0.68) | 6.88*10-8 |
 | rs11805303 | intron 6 | 0.35 | 0.41 | 1.32 (1.09-1.61) | 0.0076 |
IRGM | rs13361189 | intergenic | 0.16 | 0.21 | 1.47 (1.15-1.88) | 0.0014 |
 | rs11747270 | intergenic | 0.15 | 0.21 | 1.48 (1.16-1.90) | 0.0012 |
 | rs1000113 | intergenic | 0.15 | 0.21 | 1.49 (1.17-1.91) | 0.0011 |
PTGER4 | rs1373692 | p.T300A | 0.61 | 0.67 | 1.29 (1.06-1.58) | 0.012 |
 | rs1992660 | intergenic, near 5'-UTR | 0.60 | 0.65 | 1.21 (0.99-1.47) | 0.062 |
 | rs4613763 | intergenic | 0.07 | 0.08 | 1.05 (0.74-1.51) | 0.77 |
ATG16L1 | rs2241880 | intergenic | 0.59 | 0.63 | 1.18 (0.97-1.43) | 0.10 |
 | rs10210302 | intergenic | 0.59 | 0.62 | 1.14 (0.94-1.39) | 0.19 |
NKX2-3 | rs11190140 | intergenic, near 5'-UTR | 0.45 | 0.43 | 0.92 (0.76-1.11) | 0.36 |
IL12B | rs6887695 | intergenic | 0.32 | 0.32 | 1.03 (0.84-1.26) | 0.81 |
 | rs10045431 | intergenic | 0.71 | 0.69 | 0.94 (0.77-1.16) | 0.59 |
PTPN2 | rs2542151 | intergenic | 0.10 | 0.12 | 1.20 (0.89-1.63) | 0.22 |
TNFSF15 | rs4263839 | intron 1 | 0.76 | 0.75 | 0.95 (0.77-1.19) | 0.67 |
STAT3 | rs744166 | intron 1 | 0.61 | 0.62 | 0.99 (0.82-1.21) | 0.93 |