Gene region | Chr | Association | Method of identification | References | SNP | Description |
---|---|---|---|---|---|---|
NOTCH2 | 1 | Type 2 Diabetes | GWAS | [45] | rs10923931 | Intronic |
THADA | 2 | Type 2 Diabetes | GWAS | [45] | rs7578597 | Missense: T1187A |
ADAMTS9 | 3 | Type 2 Diabetes | GWAS | [45] | rs4607103 | 38 kb upstream |
IGF2BP2 | 3 | Type 2 Diabetes | GWAS | rs4402960 | Intronic | |
PPARG | 3 | Type 2 Diabetes | Candidate-gene studies | rs1801282 | Missense: P12A | |
WFS1 | 4 | Type 2 Diabetes | Candidate-gene studies | rs10010131 | Intron-exon junction | |
CDKAL1 | 6 | Type 2 Diabetes | GWAS | rs7754840 | Intronic | |
JAZF1 | 7 | Type 2 Diabetes | GWAS | [45] | rs864745 | Intronic |
SLC30A8 | 8 | Type 2 Diabetes | GWAS | rs13266634 | Missense: R325W | |
CDKN2A/B | 9 | Type 2 Diabetes | GWAS | rs10811661 | 125 kb upstream | |
CDC123-CAMK1D | 10 | Type 2 Diabetes | GWAS | [45] | rs12779790 | Intergenic region |
TCF7L2 | 10 | Type 2 Diabetes | Fine-mapping of linkage peak | rs7903146 | Intronic | |
HHEX | 10 | Type 2 Diabetes | GWAS | rs1111875 | 7.7 kb downstream | |
KCNJ11 | 11 | Type 2 Diabetes | Candidate-gene studies | rs5219 | Missense: E23K | |
MTNR1B | 11 | Type 2 Diabetes | GWAS | rs10830963 | Intronic | |
 |  |  |  |  | rs1387153 | 29 kb upstream |
TSPAN8-LGR5 | 12 | Type 2 Diabetes | GWAS | [45] | rs7961581 | Intronic |
HNF1B | 17 | Type 2 Diabetes | Candidate-gene studies | rs757210 | Intronic | |
NEGR1 | 1 | Obesity | GWAS | rs2568958 | 16.7 kb downstream | |
 |  |  |  |  | rs2815752 | 64 kb downstream |
SEC16B | 1 | Obesity | GWAS | [65] | rs10913469 | Intronic |
ADIPOR1 | 1 | Obesity | GWAS | [67] | rs3820152 | Intronic |
TMEM18 | 2 | Obesity | GWAS | rs7561317 | 23 kb upstream | |
 |  |  |  |  | rs6548238 | 33 kb upstream |
INSIG2 | 2 | Obesity | GWAS | rs7566605 | 10 kb upstream | |
 |  |  |  |  | rs2012693 | 25.8 kb upstream |
ETV5 - DGKG | 3 | Obesity | GWAS | [65] | rs7647305 | Intergenic |
GNPDA2 | 4 | Obesity | GWAS | [66] | rs10938397 | 453.9 kb downstream |
NCR3 - AIF1 | 6 | Obesity | GWAS | [65] | rs2844479 | Intergenic |
NAMPT | 7 | Obesity | Candidate gene study | [70] | rs10487818 | Intronic |
MTMR9 | 8 | Obesity | GWAS | [71] | rs2293855 | intronic |
LPL | 8 | Obesity | GWAS | [67] | rs3200218 | 3'UTR |
PTER | 10 | Obesity | GWAS | [72] | rs10508503 | 179 kb upstream |
PFKP | 10 | Obesity | GWAS | rs6602024 | Intronic | |
 |  |  |  |  | rs2388395 | 317 kb upstream |
 |  |  |  |  | rs2388399 | 317 kb upstream |
 |  |  |  |  | rs2388397 | 317 kb upstream |
MTCH2 | 11 | Obesity | GWAS | [66] | rs10838738 | Intronic |
BDNF | 11 | Obesity | GWAS | [65] | rs6265 | Missense V66M |
 |  |  |  |  | rs925946 | 9.2 kb upstream |
ADIPOR2 | 12 | Â | Â | [67] | rs2286385 | Intronic |
BCDIN3 D - FAIM2 | 12 | Obesity | GWAS | [65] | rs7138803 | Intergenic |
MAF | 16 | Obesity | GWAS | [72] | rs1424233 | 48 kb downstream |
SH2B1 | 16 | Obesity | GWAS | rs7498665 | Missense A434T | |
FTO | 16 | Obesity and Type 2 diabetes | GWAS | rs9939609 | Intronic | |
 |  |  |  |  | rs6499640 | Intronic |
 |  |  |  |  | rs8050136 | Intronic |
NCP1 | 16 | Obesity | GWAS | [72] | rs1805081 | Missense H 215R |
MC4R | 18 | Obesity | GWAS | rs17782313 | 187.5 kb upstream | |
 |  |  |  |  | rs17700633 | 109.1 kb upstream |
 |  |  |  |  | rs12970134 | 153.8 kb upstream |
 |  |  |  |  | rs4450508 | 125.1 kb upstream |
 |  |  |  |  | rs477181 | 142.5 kb upstream |
 |  |  |  |  | rs502933 | 142 kb upstream |
KCTD15 | 19 | Obesity | GWAS | rs11084753 | 17 kb downstream | |
 |  |  |  |  | rs29941 | 4.4 kb downstream |
CTNNBL1 | 20 | Obesity | GWAS | [69] | rs6013029 | Intronic |
 |  |  |  |  | rs16986921 | Intronic |
 |  |  |  |  | rs6020712 | Intronic |
 |  |  |  |  | rs6020846 | Intronic |
 |  |  |  |  | rs6020395 | Intronic |
 |  |  |  |  | rs16986890 | Intronic |
 |  |  |  |  | rs6096781 | 26.7 kb downstream |
 |  |  |  |  | rs6020339 | Intronic |